University of Central Florida Undergraduate Research Journal - Computational Analysis of Broad Complex Zinc-Finger Transcription Factors
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Computational Analysis of Broad Complex
Zinc-Finger Transcription Factors

By: Barbara Mascareno-Shaw
Mentor: Dr. Thomas Selby

References

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Bayer, C., X. Zhou, B. Zhou, L. M. Riddiford and L. von Kalm (2003). "Evolution of the Drosophila broad locus: the Manduca sexta broad Z4 isoform has biological activity in Drosophila." Development Genes and Evolution 213: 471-476.

Berman, H. M., J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissing, I. N. Shindyalov and P. E. Bourne (2000). "The Protein Data Bank." Nucleic Acids Research 28: 235-242.

Elrod-Erickson, M., T. E. Benson and C. O. Pabo (1998). "High-resolution structures of variant Zif268-DNA Complexes: implications for understanding zinc finger-DNA recognition." Structure 6: 451-464.

Fairall, L., J. W. Schwabe, L. Chapman, J. T. Finch and D. Rhodes (1993). "The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition." Nature 366(6454): 483-487.

BioMedCAChe. 6.X.  2002  <http://www.cachesoftware.com/biomed/ > Beaverton, OR.

Guex, N. and M. C. Peitsch (1997). "SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling." Electrophoresis 18: 2714-2723.

Hodgetts, R. B., W. C. Clark, S. L. O'Keefe, M. Schouls, K. Crossgrove, G. M. Guild and L. von Kalm (1995). "Hormonal induction of Dopa decarboxylase in the epidermis of Drosophila is mediated by the Broad-Complex." Development 121: 3913-3922.

Leach, A. R. (1996). Molecular Modelling: Principles and Applications.  Addison Wesley Longman Limited Edinburgh Gate. 595.

Lee, M. S., G. P. Gippert, K. V. Soman, D. A. Case and P. E. Wright (1989). "Three-dimensional solution structure of a single zinc finger DNA-binding domain." Science 245(4918): 635-637.

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The NIH Guide to Molecular Modeling. Center for Molecular Modeling, Division of Computational Bioscience, Center for Information Technology 2002 NIH Center for Molecular Modeling 15 September 2005 <http://cmm.info.nih.gov/modeling/guide_documents/molecular_mechanics_document.html >.

von Kalm, L., K. Crossgrove, D. von Seggern, G. M. Guild and S. K. Beckendorf (1994). "The Broad-Complex directly controls a tissue-specific response to the steroid hormone ecdysone at the onset of Drosophila metamorphosis." The EMBO Journal 13(15): 3505-3516.

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